Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015833587.1_cds_XP_016505303.1_18656
CDS Infomation

[gene=LOC107823214] [db_xref=GeneID:107823214] [protein=lysine-specific demethylase JMJ25 isoform X2] [protein_id=XP_016505303.1] [location=join(50087..50683,50808..50953,51900..52002,52088..52220,52300..52363,52450..53164,54764..55093,55485..56009,56106..56178,56257..56342,57709..57828,58186..58257)] [gbkey=CDS]
Sequence

ATGGCGGAAAACGGTGCTCTGCCGGACGATCTCCGGTGTAACAGAACGGACGGCCGGCAA
TGGCGGTGCAAACGGCGGGTAGTGGAAGGGAAAAAGCTTTGTGAAATTCACTATATTCAA
GGCCGTCACAGGAATAAGAAGCAGAAGGTACCGGAGTCGCTGAAAATCATGAGAAATACG
AAAAACAAGAAGAAGCCCAAGATTCAGAATTCAAAAGGGTCTCTTGAAATTGGGTTGAGA
ATATTAAAGAAGAAGAAGAAACCCCTCAAGCCTAAACCCTGTGTTTCAGAGGCATTAGAT
GAAGCTTTGAGGAGAATGGAACTTAAAAGAGGGGATTTGCCGTTAGAGTTGATTCGGGTT
TTCTTGAAACGACAATTAGAGAAGAAAAAAGATAAAGAATCAAAGAATGATAGTGCTGAA
TTGATGAGAGAATTCCCTAATGCTGTAATGGCTATTCCTCCTACACCCACGGAGAATTTC
AGCAATGCAGGTTCTGTTTTAGACATAAAATTAGGCCTGGATTCGAGCTCTAGCCCCTTT
TTGTTAAGGCGTTTCCGATCAAAAAATATTGAACCCCTTCCAATTAGTACAATGCAGGCC
GTGCCATTTGCTAAGAACGGGAAGAATTTAAGTAGAGTAAACAGGAGGAAGTGTCATTGG
TGTAGAAGAAGCAGCTACCGGGTTCTGATCAAGTGTTCGAGGTGTAAGAAACAATTCTTC
TGTCTGGATTGTATTAAAGAAAGGTATTTGGAGAAGCAAGAAATTAGAGGGGCATGTCCT
GTTTGCCGTGGAGCCTGTAGCTGTCGGATCTGCAAAAGGAATGAATTGAAGCCCTCCAGT
CATAAGGAATTCTGTAGGCATAAAAGGAAGGTTCAAAAAGTCCAGCTACTTTATCATCTG
GTCCACCTGCTTCTTCCTGTACTGGAAAAAATAAATGAAGAGCAGAGAATTGAAGTGGAG
ATAGAAGCAAAGATATCGGGAAAGCAGCAACCTGACATTCAGGTTCAGCAGGCTTCAGCA
GGAGAAGGAAAATTATATAGCTGTAGTAACTGCAAAACCTCCATTCTGGATTACCACAGA
ATCTGCTCTGAGTGTTCATATAGCCTTTGCTTACATTGTTGTTGGGAGTCCCGTCGTGGA
AGCTTAGCTGAAGATTGCAAATCCAATGGTTCTAATGAAGAACAAGCTTGTTCTTCTAAC
TTTGAGCGAACATCAAGGATGAAGCATACTAGCACCTCAAGGCAAAGTTTCTCGGGGATA
CATTACTTGCAAGCTTGTGCTGATGGAAGTATATCTTGCCCCCCTGCAGAATACGGCGGT
TGTAGTAATAGCATCCTGGAATTAAGATGTGTATTTCCCTACGCTTGGATCAAGGAACTG
GAAATCAGTGCTGAAGCAATATTATGCAGCTACAACTTTCAGAACGCGGAACACATTTTT
TCATCTTGCTCATTATGCAGGGGAAGCGATCACAAAGATGCTGTTTTTGATTCATTCATT
AAAGTGGCTGATAGACAAGATTCGCGGGACAGGTTCCTGTATTGTCCGTCTATAAAGAAT
CTCCGTGAAGAAAACCTTGAACACTTTCAGAAACACTGGGGTGAAGCTCATCCTATTATA
GTACGAAATGTGCTTCGAAATTCTCCTGATTTGTCTTGGGATCCTGTTGTTATGTTCTGC
ACTTACCTTGAGAAAAGGTCAAAATGTTCCCGAGATAAAGAAGCAGCTAAGGCACAAAAT
CACTCGGACTGGTGTGAGGTTGAAATAGCTAGAAAGCAGATATTTATGGGGTCACTTGAA
TGGCAAACACATGCAACAATGCAGCGCGATATGGTAAAGTTTAGAGCATGGCTTTCTTCC
CATCTATTCAAAGAACAGTTTCCTGCTCACTATGCGGAGGTCTTGAGGGCTTTGCCACTT
CAAGAGTATATGAATCCAAAATCTGGTCTTCTAAATCTAGCAGTTAAACTGCCACCGGAA
ATGCCAGAAATAGATTTGGGACCTTCAATCTATATTTCCTATGGTGGACCTGAAGAAGTA
TCGCAAGCAGAATTTGTCACTAAACTATGTTGTGAATCTTATGATGTGGTTAATATTCTT
GCATGTGCTACCGATGTTCCCATTTCCAAGGAACAAATAAGAAAAATAAAATGTTTAATG
AAAAATAAGAAGCCTCAAGATCACAAGGAATCTACCAGCTACTCAAGTGATCAGAAAGGA
AAATCATCCCTGCATAGTGGAGATACAGAAGAATCCTGTCTGCAGGATGGAACTGGCGGC
CACTTGCCTGATGGTATTGCTAAACGACCTTTCTACTCTGCTGACTCACTAAATGGTCAA
AGGTATGGAGACCAAGATGGCAATATCTCCAGTGACAATGAAAATGACTCAGAATTTGAG
TCTGATGTCTCACTGTTCTGCTCTGGATCTGTTGAAAGATCTGAAGATTCAGACAGTGAT
TATCTTTTTGAAGATGTCGATAGTGTAAAGAAAGAAGCAAAACCCTCAGGTGCTCAGTGG
GATGTTTTCCGCAGACAAGATGTCCCAAAGCTTCTAGAGTACCTCAGAAGGCATTCTAGC
GAGTTCACCTCCACGCCTGGTTATTCCAAACAAGTTATTCACCCAATTCTTGATCGAAGT
TTCTTCTTTGATGCATTCCACAAATTGAGGCTTAAGGAGGAATTTGACATTCAACCTTGG
ACTTTTGAACAGCATCTTGGAGAAGCGATTCTCATCCCTGCTGGATGTCCATATCAAGTC
AAACAACTTAAGTCATGCATCAATGTTGTTCTGGACTTCATCTCGCCTGAAAATGTTGCT
GAATGTATCCACATAATTGATGAAATTCGTCTACTTCCTGAGCACCACAAAGCCAAGGGA
AAAGTGCTGGAGGTGAAGAAAATGGCTGTTTGTGGAATCAGCAATGCAATTGCAGAGATT
CGCGACCTCGTGCCGACCTCTTGA

Peptide Sequence

PEP ID

XP_016505303.1
PEP Infomation

PREDICTED: lysine-specific demethylase JMJ25 isoform X2 [Nicotiana tabacum]
Sequence

MAENGALPDDLRCNRTDGRQWRCKRRVVEGKKLCEIHYIQGRHRNKKQKVPESLKIMRNT
KNKKKPKIQNSKGSLEIGLRILKKKKKPLKPKPCVSEALDEALRRMELKRGDLPLELIRV
FLKRQLEKKKDKESKNDSAELMREFPNAVMAIPPTPTENFSNAGSVLDIKLGLDSSSSPF
LLRRFRSKNIEPLPISTMQAVPFAKNGKNLSRVNRRKCHWCRRSSYRVLIKCSRCKKQFF
CLDCIKERYLEKQEIRGACPVCRGACSCRICKRNELKPSSHKEFCRHKRKVQKVQLLYHL
VHLLLPVLEKINEEQRIEVEIEAKISGKQQPDIQVQQASAGEGKLYSCSNCKTSILDYHR
ICSECSYSLCLHCCWESRRGSLAEDCKSNGSNEEQACSSNFERTSRMKHTSTSRQSFSGI
HYLQACADGSISCPPAEYGGCSNSILELRCVFPYAWIKELEISAEAILCSYNFQNAEHIF
SSCSLCRGSDHKDAVFDSFIKVADRQDSRDRFLYCPSIKNLREENLEHFQKHWGEAHPII
VRNVLRNSPDLSWDPVVMFCTYLEKRSKCSRDKEAAKAQNHSDWCEVEIARKQIFMGSLE
WQTHATMQRDMVKFRAWLSSHLFKEQFPAHYAEVLRALPLQEYMNPKSGLLNLAVKLPPE
MPEIDLGPSIYISYGGPEEVSQAEFVTKLCCESYDVVNILACATDVPISKEQIRKIKCLM
KNKKPQDHKESTSYSSDQKGKSSLHSGDTEESCLQDGTGGHLPDGIAKRPFYSADSLNGQ
RYGDQDGNISSDNENDSEFESDVSLFCSGSVERSEDSDSDYLFEDVDSVKKEAKPSGAQW
DVFRRQDVPKLLEYLRRHSSEFTSTPGYSKQVIHPILDRSFFFDAFHKLRLKEEFDIQPW
TFEQHLGEAILIPAGCPYQVKQLKSCINVVLDFISPENVAECIHIIDEIRLLPEHHKAKG
KVLEVKKMAVCGISNAIAEIRDLVPTS

Transcript Sequence

Gene sequence data has not been registered.